Comparison of GPS imputation methods in environmental health research

Submitted: 15 February 2022
Accepted: 4 July 2022
Published: 29 August 2022
Abstract Views: 1895
PDF: 764
HTML: 29
Publisher's note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

Authors

Assessment of personal exposure in the external environment commonly relies on global positioning system (GPS) measurements. However, it has been challenging to determine exposures accurately due to missing data in GPS trajectories. In environmental health research using GPS, missing data are often discarded or are typically imputed based on the last known location or linear interpolation. Imputation is said to mitigate bias in exposure measures, but methods used are hardly evaluated against ground truth. Widely used imputation methods assume that a person is either stationary or constantly moving during the missing interval. Relaxing this assumption, we propose a method for imputing locations as a function of a person’s likely movement state (stop, move) during the missing interval. We then evaluate the proposed method in terms of the accuracy of imputed location, movement state, and daily mobility measures such as the number of trips and time spent on places visited. Experiments based on real data collected by participants (n=59) show that the proposed approach outperforms existing methods. Imputation to the last known location can lead to large deviation from the actual location when gap distance is large. Linear interpolation is shown to result in large errors in mobility measures. Researchers should be aware that the different treatment of missing data can affect the spatiotemporal accuracy of GPS-based exposure assessments.

Dimensions

Altmetric

PlumX Metrics

Downloads

Download data is not yet available.

Citations

Allahbakhshi H, Conrow L, Naimi B, Weibel R, 2020. Using accelerometer and GPS data for real-life physical activity type detection. Sensors 20:588. DOI: https://doi.org/10.3390/s20030588
Almanza E, Jerrett M, Dunton G, Seto E, Pentz MA, 2012. A study of community design, greenness, and physical activity in children using satellite, GPS and accelerometer data. Health Place 18:46-54. DOI: https://doi.org/10.1016/j.healthplace.2011.09.003
Barnett I, Onnela J-P, 2018. Inferring mobility measures from GPS traces with missing data. Biostat Oxf Engl 21:e98-e112. DOI: https://doi.org/10.1093/biostatistics/kxy059
Carlson JA, Jankowska MM, Meseck K, Godbole S, Natarajan L, Raab F, Demchak B, Patrick K, Kerr J, 2015. Validity of PALMS GPS scoring of active and passive travel compared to SenseCam. Med Sci Sports Exerc 47:662-7. DOI: https://doi.org/10.1249/MSS.0000000000000446
Chaix B, Benmarhnia T, Kestens Y, Brondeel R, Perchoux C, Gerber P, Duncan DT, 2019. Combining sensor tracking with a GPS-based mobility survey to better measure physical activity in trips: public transport generates walking. Int J Behav Nutr Phys Act 16:84. DOI: https://doi.org/10.1186/s12966-019-0841-2
Chaix B, Kestens Y, Perchoux C, Karusisi N, Merlo J, Labadi K, 2012. An interactive mapping tool to assess individual mobility patterns in neighborhood studies. Am J Prev Med 43:440-50. DOI: https://doi.org/10.1016/j.amepre.2012.06.026
Chaix B, Méline J, Duncan S, Merrien C, Karusisi N, Perchoux C, Lewin A, Labadi K, Kestens Y, 2013. GPS tracking in neighborhood and health studies: a step forward for environmental exposure assessment, a step backward for causal inference? Health Place 21:46-51. DOI: https://doi.org/10.1016/j.healthplace.2013.01.003
Christensen A, Griffiths C, Hobbs M, Gorse C, Radley D, 2021. Accuracy of buffers and self-drawn neighbourhoods in representing adolescent GPS measured activity spaces: an exploratory study. Health Place 69:102569. DOI: https://doi.org/10.1016/j.healthplace.2021.102569
Evans CC, Hanke TA, Zielke D, Keller S, Ruroede K, 2012. Monitoring community mobility with global positioning system technology after a stroke: a case study. J Neurol Phys Ther 36. DOI: https://doi.org/10.1097/NPT.0b013e318256511a
Fillekes MP, Kim E-K, Trumpf R, Zijlstra W, Giannouli E, Weibel R, 2019. Assessing older adults’ daily mobility: a comparison of GPS-derived and self-reported mobility indicators. Sensors 19:4551. DOI: https://doi.org/10.3390/s19204551
Hanke TA, Hwang S, Keller S, Zielke D, Hailey T, Nathaniel K, Evans CC, 2019. Measuring community mobility in survivors of stroke using global positioning system technology: a prospective observational study. J Neurol Phys Ther 43:175-85. DOI: https://doi.org/10.1097/NPT.0000000000000279
Hirsch JA, Winters M, Clarke P, McKay H, 2014. Generating GPS activity spaces that shed light upon the mobility habits of older adults: a descriptive analysis. Int J Health Geogr 13:51. DOI: https://doi.org/10.1186/1476-072X-13-51
Hordacre B, Barr C, Crotty M, 2014. Use of an activity monitor and GPS device to assess community activity and participation in transtibial amputees. Sensors 14:5845-59. DOI: https://doi.org/10.3390/s140405845
Hornsby K, Egenhofer MJ, 2002. Modeling moving objects over multiple granularities. Ann Math Artif Intell 36:177-94. DOI: https://doi.org/10.1023/A:1015812206586
Hwang S, VanDeMark C, Dhatt N, Yalla SV, Crews RT, 2018. Segmenting human trajectory data by movement states while addressing signal loss and signal noise. Int J Geogr Inf Sci 32:1391-412. DOI: https://doi.org/10.1080/13658816.2018.1423685
James P, Hart JE, Hipp JA, Mitchell JA, Kerr J, Hurvitz PM, Glanz K, Laden F, 2017. GPS-based exposure to greenness and walkability and accelerometry-based physical activity. Cancer Epidemiol Biomark Prev Publ Am Assoc Cancer Res Cosponsored Am Soc Prev Oncol 26:525-32. DOI: https://doi.org/10.1158/1055-9965.EPI-16-0925
Jankowska MM, Schipperijn J, Kerr J, 2015. A framework for using GPS data in physical activity and sedentary behavior studies. Exerc Sport Sci Rev 43:48-56. DOI: https://doi.org/10.1249/JES.0000000000000035
Jansen M, Kamphuis CBM, Pierik FH, Ettema DF, Dijst MJ, 2018. Neighborhood-based PA and its environmental correlates: a GIS- and GPS based cross-sectional study in the Netherlands. BMC Public Health 18:233. DOI: https://doi.org/10.1186/s12889-018-5086-5
Jayaraman A, Deeny S, Eisenberg Y, Mathur G, Kuiken T, 2014. Global position sensing and step activity as outcome measures of community mobility and social interaction for an individual with a transfemoral amputation due to dysvascular disease. Phys Ther 94:401-10. DOI: https://doi.org/10.2522/ptj.20120527
Jones AP, Coombes EG, Griffin SJ, Sluijs EM van, 2009. Environmental supportiveness for physical activity in English schoolchildren: a study using global positioning systems. Int J Behav Nutr Phys Act 6:42. DOI: https://doi.org/10.1186/1479-5868-6-42
Kerr J, Duncan S, Schipperjin J, 2011. Using global positioning systems in health research: a practical approach to data collection and processing. Am J Prev Med 41:532-40. DOI: https://doi.org/10.1016/j.amepre.2011.07.017
Kerr J, Marshall S, Godbole S, Neukam S, Crist K, Wasilenko K, Golshan S, Buchner D, 2012. The relationship between outdoor activity and health in older adults using GPS. Int J Environ Res Public Health 9:4615-25. DOI: https://doi.org/10.3390/ijerph9124615
Klinker CD, Schipperijn J, Christian H, Kerr J, Ersbøll AK, Troelsen J, 2014. Using accelerometers and global positioning system devices to assess gender and age differences in children’s school, transport, leisure and home based physical activity. Int J Behav Nutr Phys Act 11:8. DOI: https://doi.org/10.1186/1479-5868-11-8
Krenn PJ, Titze S, Oja P, Jones A, Ogilvie D, 2011. Use of global positioning systems to study physical activity and the environment: a systematic review. Am J Prev Med 41:508-15. DOI: https://doi.org/10.1016/j.amepre.2011.06.046
Lee K, Kwan M-P, 2018. Physical activity classification in free-living conditions using smartphone accelerometer data and exploration of predicted results. Comput Environ Urban Syst 67:124-31. DOI: https://doi.org/10.1016/j.compenvurbsys.2017.09.012
Loh M, Sarigiannis D, Gotti A, Karakitsios S, Pronk A, Kuijpers E, Annesi-Maesano I, Baiz N, Madureira J, Oliveira Fernandes E, Jerrett M, Cherrie JW, 2017. How sensors might help define the external exposome. Int J Environ Res Public Health 14:434. DOI: https://doi.org/10.3390/ijerph14040434
Maddison R, Jiang Y, Vander Hoorn S, Exeter D, Mhurchu CN, Dorey E, 2010. Describing patterns of physical activity in adolescents using global positioning systems and accelerometry. Pediatr Exerc Sci 22:392-407. DOI: https://doi.org/10.1123/pes.22.3.392
McCrorie PR, Fenton C, Ellaway A, 2014. Combining GPS, GIS, and accelerometry to explore the physical activity and environment relationship in children and young people - a review. Int J Behav Nutr Phys Act 11:93. DOI: https://doi.org/10.1186/s12966-014-0093-0
McGrath LJ, Hopkins WG, Hinckson EA, 2015. Associations of objectively measured built-environment attributes with youth moderate-vigorous physical activity: a systematic review and meta-analysis. Sports Med 45:841-65. DOI: https://doi.org/10.1007/s40279-015-0301-3
Mennis J, Mason M, Coffman DL, Henry K, 2018. Geographic imputation of missing activity space data from ecological momentary assessment (EMA) GPS positions. Int J Environ Res Public Health 15:2740. DOI: https://doi.org/10.3390/ijerph15122740
Meseck K, Jankowska MM, Schipperijn J, Natarajan L, Godbole S, Carlson J, Takemoto M, Crist K, Kerr J, 2016. Is missing geographic positioning system data in accelerometry studies a problem, and is imputation the solution? Geospat Health 11:403. DOI: https://doi.org/10.4081/gh.2016.403
Miller HJ, 1991. Modelling accessibility using space-time prism concepts within geographical information systems. Int J Geogr Inf Syst 5:287-301. DOI: https://doi.org/10.1080/02693799108927856
Oliver M, Badland H, Mavoa S, Duncan MJ, Duncan S, 2010. Combining GPS, GIS, and accelerometry: methodological issues in the assessment of location and intensity of travel behaviors. J Phys Act Health 7:102-8. DOI: https://doi.org/10.1123/jpah.7.1.102
Oreskovic NM, Perrin JM, Robinson AI, Locascio JJ, Blossom J, Chen ML, Winickoff JP, Field AE, Green C, Goodman E, 2015. Adolescents’ use of the built environment for physical activity. BMC Public Health 15:251. DOI: https://doi.org/10.1186/s12889-015-1596-6
Pfoser D, Jensen CS, 1999. Capturing the uncertainty of moving-object representations. In: Güting RH, Papadias D, Lochovsky F (Eds.), Advances in spatial databases, lecture notes in computer science. Springer, Berlin-Heidelberg, pp. 111-131. DOI: https://doi.org/10.1007/3-540-48482-5_9
Quigg R, Gray A, Reeder AI, Holt A, Waters DL, 2010. Using accelerometers and GPS units to identify the proportion of daily physical activity located in parks with playgrounds in New Zealand children. Prev Med 50:235-40. DOI: https://doi.org/10.1016/j.ypmed.2010.02.002
Rainham DG, Bates CJ, Blanchard CM, Dummer TJ, Kirk SF, Shearer CL, 2012. Spatial classification of youth physical activity patterns. Am J Prev Med 42:e87-96. DOI: https://doi.org/10.1016/j.amepre.2012.02.011
Remmers T, Thijs C, Ettema D, de Vries S, Slingerland M, Kremers S, 2019. Critical hours and important environments: relationships between afterschool physical activity and the physical environment using GPS, GIS and accelerometers in 10-12-year-old children. Int J Environ Res Public Health 16:3116. DOI: https://doi.org/10.3390/ijerph16173116
Rodriguez DA, Brown AL, Troped PJ, 2005. Portable global positioning units to complement accelerometery-based physical activity monitors. Med Sci Sports Exerc 37:S572-81. DOI: https://doi.org/10.1249/01.mss.0000185297.72328.ce
Rundle AG, Sheehan DM, Quinn JW, Bartley K, Eisenhower D, Bader MMD, Lovasi GS, Neckerman KM, 2016. Using GPS data to study neighborhood walkability and physical activity. Am J Prev Med 50:e65-72. DOI: https://doi.org/10.1016/j.amepre.2015.07.033
Sambasivan N, Kapania S, Highfill H, Akrong D, Paritosh PK, Aroyo LM, 2021. Everyone wants to do the model work, not the data work: data cascades in high-stakes AI. In: Proceedings of the 2021 CHI Conference on Human Factors in Computing Systems, pp. 1-15. DOI: https://doi.org/10.1145/3411764.3445518
Tamura K, Wilson JS, Goldfeld K, Puett RC, Klenosky DB, Harper WA, Troped PJ, 2019. Accelerometer and GPS data to analyze built environments and physical activity. Res Q Exerc Sport 90:395-402. DOI: https://doi.org/10.1080/02701367.2019.1609649
Van Hecke L, Verhoeven H, Clarys P, Van Dyck D, Van de Weghe N, Baert T, Deforche B, Van Cauwenberg J, 2018. Factors related with public open space use among adolescents: a study using GPS and accelerometers. Int J Health Geogr 17:3. DOI: https://doi.org/10.1186/s12942-018-0123-2
Wei L-Y, Zheng Y, Peng,W-C, 2012. Constructing popular routes from uncertain trajectories. In: Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, KDD ‘12. ACM, New York, NY, USA, pp. 195-203. DOI: https://doi.org/10.1145/2339530.2339562
Wheeler BW, Cooper AR, Page AS, Jago R, 2010. Greenspace and children’s physical activity: a GPS/GIS analysis of the PEACH project. Prev Med 51:148-152. DOI: https://doi.org/10.1016/j.ypmed.2010.06.001
Wiehe SE, Hoch SC, Liu GC, Carroll AE, Wilson JS, Fortenberry JD, 2008. Adolescent travel patterns: pilot data indicating distance from home varies by time of day and day of week. J. Adolesc Health 42:418-20. DOI: https://doi.org/10.1016/j.jadohealth.2007.09.018
Yoo E-H, Roberts JE, Eum Y, Shi Y, 2020. Quality of hybrid location data drawn from GPS-enabled mobile phones: Does it matter? Trans GIS 24:462-82. DOI: https://doi.org/10.1111/tgis.12612
Zhao P, Jonietz D, Raubal M, 2021. Applying frequent-pattern mining and time geography to impute gaps in smartphone-based human-movement data. Int J Geogr Inf Sci 0:1-29.

How to Cite

Hwang, S., Webber-Ritchey, K., & Moxley, E. (2022). Comparison of GPS imputation methods in environmental health research. Geospatial Health, 17(2). https://doi.org/10.4081/gh.2022.1081